Publications

Publications in reverse chronological order.

2026

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    Back-Illumination Phase Imaging Enables Nanoscale Drift Stabilization in Nontransparent Biological Tissues
    Hanna Manko, Marc Tondusson, Adeline Boyreau, and 4 more authors
    ACS Photonics, Mar 2026

2025

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    FASER: a tool for vectorial point spread function simulation with applications in stimulated emission depletion microscopy
    Johannes Roos, Stéphane Bancelin, and U. Valentin Nägerl
    Neurophotonics, Feb 2025

2024

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    Arkitekt: streaming analysis and real-time workflows for microscopy
    Johannes Roos, Stéphane Bancelin, Tom Delaire, and 7 more authors
    Nature Methods, Sep 2024
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    Degradation of Proteoglycans and Collagen in Equine Meniscal Tissues
    Julia Dubuc, Melodie Jil Schneider, Valerie Dubuc, and 6 more authors
    International Journal of Molecular Sciences, Jun 2024
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    Impact of a tilted coverslip on two-photon and STED microscopy
    Guillaume Le Bourdellès, Luc Mercier, Johannes Roos, and 2 more authors
    Biomedical Optics Express, Jan 2024
  4. A STED Microscope for Multimodal Investigation of Dendritic Spine Structure and Function
    Federica Quici, Yulia Dembitskaya, Stéphane Bancelin, and 2 more authors
    2024
  5. Understanding the nervous system: lessons from Frontiers in Neurophotonics
    Yves De Koninck, Johanna Alonso, Stéphane Bancelin, and 35 more authors
    Neurophotonics, Mar 2024

2023

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    Second harmonic generation microscopy: a powerful tool for bio-imaging
    Arash Aghigh, Stéphane Bancelin, Maxime Rivard, and 3 more authors
    Biophysical Reviews, Jan 2023
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    Shadow imaging for panoptical visualization of brain tissue in vivo
    Yulia Dembitskaya, Andrew K. J. Boyce, Agata Idziak, and 15 more authors
    Nature Communications, Oct 2023
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    Imaging dendritic spines in the hippocampus of a living mouse by 3D-stimulated emission depletion microscopy
    Stéphane Bancelin, Luc Mercier, Johannes Roos, and 4 more authors
    Neurophotonics, May 2023
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    The Impact of Chemical Fixation on the Microanatomy of Mouse Organotypic Hippocampal Slices
    Agata Idziak, V. V. G. Krishna Inavalli, Stéphane Bancelin, and 2 more authors
    eneuro, Sep 2023

2021

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    Aberration correction in stimulated emission depletion microscopy to increase imaging depth in living brain tissue
    Stéphane Bancelin, Luc Mercier, Emanuele Murana, and 1 more author
    Neurophotonics, Jun 2021
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    Super‐resolution shadow imaging reveals local remodeling of astrocytic microstructures and brain extracellular space after osmotic challenge
    Misa Arizono, V.V.G. Krishna Inavalli, Stéphane Bancelin, and 2 more authors
    Glia, Mar 2021
  3. Nanoscale imaging of the functional anatomy of the brain
    Misa Arizono, Stéphane Bancelin, Philipp Bethge, and 6 more authors
    Neuroforum, Mar 2021

2020

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    Visualiser l’espace extracellulaire du cerveau par imagerie super-résolutive en contraste inversé
    Misa Arizono, Stéphane Bancelin, and U. Valentin Nägerl
    médecine/sciences, Jun 2020
  2. Ex-vivo multiscale biomechanics in murine skin and human cornea using multiphoton microscopy (Conference Presentation)
    Stéphane Bancelin, Barbara Lynch, Guillaume Ducourthial, and 6 more authors
    In Clinical Biophotonics, Apr 2020

2019

  1. Contribution of the collagen fibers to the skin mechanics
    J. S. Affagard, B. Lynch, S. Bancelin, and 5 more authors
    Computer Methods in Biomechanics and Biomedical Engineering, May 2019
  2. Combination of Traction Assays and Multiphoton Imaging to Quantify Skin Biomechanics
    Stéphane Bancelin, Barbara Lynch, Christelle Bonod-Bidaud, and 4 more authors
    2019

2018

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    Combining tensile testing and structural analysis at the single collagen fibril level
    Andrew S. Quigley, Stéphane Bancelin, Dylan Deska-Gauthier, and 3 more authors
    Scientific Data, Oct 2018
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    Effect of refractive index mismatch on forward-to-backward ratios in SHG imaging
    Jarno N. Kolk, Stéphane Bancelin, Charalambos Kioulos, and 3 more authors
    Optics Letters, Oct 2018
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    Chronic 2P-STED imaging reveals high turnover of dendritic spines in the hippocampus in vivo
    Thomas Pfeiffer, Stefanie Poll, Stephane Bancelin, and 6 more authors
    eLife, Jun 2018
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    Gouy phase shift measurement using interferometric second-harmonic generation
    Stéphane Bancelin, Jarno N. Kolk, Andrew S. Quigley, and 5 more authors
    Optics Letters, Apr 2018
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    In tendons, differing physiological requirements lead to functionally distinct nanostructures
    Andrew S. Quigley, Stéphane Bancelin, Dylan Deska-Gauthier, and 3 more authors
    Scientific Reports, Mar 2018
  6. Role of Refractive Index Mismatch in Backward Nonlinear Optical Imaging
    Jarno N. Kolk, Charalambos Kioulos, Antonino Calà Lesina, and 3 more authors
    In Biophotonics Congress: Biomedical Optics Congress 2018 (Microscopy/Translational/Brain/OTS), 2018

2017

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    Affine kinematics in planar fibrous connective tissues: an experimental investigation
    C. Jayyosi, J.-S. Affagard, G. Ducourthial, and 8 more authors
    Biomechanics and Modeling in Mechanobiology, Mar 2017
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    Probing microtubules polarity in mitotic spindles in situ using Interferometric Second Harmonic Generation Microscopy
    S. Bancelin, C.-A. Couture, M. Pinsard, and 3 more authors
    Scientific Reports, Jul 2017
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    A novel microstructural interpretation for the biomechanics of mouse skin derived from multiscale characterization
    Barbara Lynch, Stéphane Bancelin, Christelle Bonod-Bidaud, and 4 more authors
    Acta Biomaterialia, Mar 2017
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    How aging impacts skin biomechanics: a multiscale study in mice
    Barbara Lynch, Christelle Bonod-Bidaud, Guillaume Ducourthial, and 6 more authors
    Scientific Reports, Oct 2017
  5. Polarization-resolved Second Harmonic Imaging of collagen organization in connective tissues - Application to biomechanics
    Claire Teulon, Gaël Latour, Ivan Gusachenko, and 9 more authors
    In Optics in the Life Sciences Congress, 2017

2016

  1. Evolution of the Skin Microstructural Organization During a Mechanical Assay
    B. Lynch, S. Bancelin, C. Bonod-Bidaud, and 3 more authors
    Sep 2016
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    Nonlinear optical properties of calcium barium niobate epitaxial thin films
    Stéphane Bancelin, Sébastien Vigne, Nadir Hossain, and 2 more authors
    Optics Express, Jul 2016
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    Femoral epiphyseal cartilage matrix changes at predilection sites of equine osteochondrosis: Quantitative MRI, second‐harmonic microscopy, and histological findings
    Gabrielle Martel, Charles‐André Couture, Guillaume Gilbert, and 6 more authors
    Journal of Orthopaedic Research, Feb 2016
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    Fast interferometric second harmonic generation microscopy
    Stéphane Bancelin, Charles-André Couture, Katherine Légaré, and 4 more authors
    Biomedical Optics Express, Jan 2016

2015

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    Analysis of forward and backward Second Harmonic Generation images to probe the nanoscale structure of collagen within bone and cartilage
    Marie‐Andrée Houle, Charles‐André Couture, Stéphane Bancelin, and 6 more authors
    Journal of Biophotonics, Sep 2015
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    Optimization of Picrosirius red staining protocol to determine collagen fiber orientations in vaginal and uterine cervical tissues by Mueller polarized microscopy
    André Nazac, Stéphane Bancelin, Benjamin Teig, and 4 more authors
    Microscopy Research and Technique, Jun 2015
  3. Second Harmonic Generation quantitative measurements on collagen fibrils through correlation to electron microscopy
    S. Bancelin, C. Aimé, I. Gusachenko, and 4 more authors
    In Multiphoton Microscopy in the Biomedical Sciences XV, Mar 2015
  4. Ex vivo multiscale quantitation of skin biomechanics in wild-type and genetically-modified mice using multiphoton microscopy
    Stéphane Bancelin, Barbara Lynch, Christelle Bonod-Bidaud, and 6 more authors
    Scientific Reports, Dec 2015
  5. High Contrast Interferometric Second Harmonic Generation Microscopy Probes the Polarity of Fibrils in Complex Collagenous Tissues
    C.-A. Couture, S. Bancelin, M. Rivard, and 6 more authors
    In Optics in the Life Sciences, 2015
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    The Impact of Collagen Fibril Polarity on Second Harmonic Generation Microscopy
    Charles-André Couture, Stéphane Bancelin, Jarno Van der Kolk, and 9 more authors
    Biophysical Journal, Dec 2015

2014

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    Determination of collagen fiber orientation in histological slides using Mueller microscopy and validation by second harmonic generation imaging
    Stéphane Bancelin, André Nazac, Bicher Haj Ibrahim, and 7 more authors
    Optics Express, Sep 2014
  2. Determination of collagen fibril size via absolute measurements of second-harmonic generation signals
    Stéphane Bancelin, Carole Aimé, Ivan Gusachenko, and 4 more authors
    Nature Communications, Sep 2014
  3. Fibrillogenesis from nanosurfaces: multiphoton imaging and stereological analysis of collagen 3D self-assembly dynamics
    Stéphane Bancelin, Etienne Decencière, Vaïa Machairas, and 4 more authors
    Soft Matter, 2014

2013

  1. Second Harmonic Generation imaging of collagen fibrillogenesis
    S. Bancelin, C. Aime, V. Machairas, and 5 more authors
    In 2013 Conference on Lasers & Electro-Optics Europe & International Quantum Electronics Conference CLEO EUROPE/IQEC, May 2013

2012

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    In situ three-dimensional monitoring of collagen fibrillogenesis using SHG microscopy
    S. Bancelin, C. Aimé, T. Coradin, and 1 more author
    Biomedical Optics Express, May 2012

2010

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    Effect of Incident Light Wavelength and Corneal Edema on Light Scattering and Penetration: Laboratory Study of Human Corneas
    Donald A. Peyrot, Florent Aptel, Caroline Crotti, and 9 more authors
    Journal of Refractive Surgery, Oct 2010